Changelog • GeoPressureR

GeoPressureR v3.2

Major

Use the new GeoPressureAPI pressurepath entry point for geopressurepath_create()
Update to GeoPressureAPI v2 for geopressure_timeseries() https://github.com/Rafnuss/GeoPressureR/pull/103/commits/732d1a02cc241dc7d2dde3401c8747fa860650c6
Fix major bug https://github.com/Rafnuss/GeoPressureR/pull/103/commits/05c3203ef1588bbc1f769050377cadf5f1aadcbd
Migrate from httrto httr2
Fix major bug with saving enviremnt variable in param https://github.com/Rafnuss/GeoPressureR/commit/9bcbf790a7de133448c738db272bf136dc831f8f
Add functions speed2bearing() and windsupport() https://github.com/Rafnuss/GeoPressureR/commit/fe244f6057db14b6a286c0a77aaaef4c5ec0152c
Use interpolated stap_id for flight instead of 0 https://github.com/Rafnuss/GeoPressureR/commit/d7491c2a5580c9eeafe598935933727489590a75
Create edge_add_wind() https://github.com/Rafnuss/GeoPressureR/commit/36412dc8f0fd061798a701ca632766dbe6f069c8
Create path2elevation() using GeoPressureAPI to compute ground elevation from a path

Minor

Add workers argument in graph_create() https://github.com/Rafnuss/GeoPressureR/commit/e1ce45882809e1fd3da0e8feb2ff80ac70f2bf8b
Add codemeta.json https://github.com/Rafnuss/GeoPressureR/pull/105/commits/4f7f7bce8875b4af59db3fc1ce403d41d6317469
Add project status badge https://github.com/Rafnuss/GeoPressureR/pull/105/commits/ecd8f61ec49dcd376748e54d19dfb2000675d302
Fix leaflet tile provider with Stadia change https://github.com/Rafnuss/GeoPressureR/pull/106/commits/8d9bd159874deb87d61907ea14911eca12877038
Add WORDLIST for spelling package.
Remove the use of ind in path https://github.com/Rafnuss/GeoPressureR/commit/f7b38e1c1b06666f590df394395d7db387f2565a
Read temperature sensor https://github.com/Rafnuss/GeoPressureR/commit/17524658a5f49466a211ea5bfbfc34c523b09a47
Only download wind data for non-existing file by default (instead of all flights) https://github.com/Rafnuss/GeoPressureR/commit/b6a2c41420bef2354a9ace640adffcb4e79e1aa1
Remove pressurepath2altitude() now computed in pressurepath_create()

Full Changelog: https://github.com/Rafnuss/GeoPressureR/compare/v3.2.0…v3.1.0 ## Full Changelog https://github.com/Rafnuss/GeoPressureR/compare/v3.2.0…v3.1.0

GeoPressureR v3.1

Major

Update to GeoPressureAPI v2, using thr_mask in geopressure_map_mismatch() and splitting keep_mse_mask.
Adjust computation of ground speed to account for grid resolution.

Minor

Use negative indexing for known
remove trailing / to default directories.
documentations and minor fixes.

Full Changelog

https://github.com/Rafnuss/GeoPressureR/compare/v3.0.0…v3.1.0

GeoPressureR v3.0

Guiding principles of v3

This new version consists of a significant revamp of the entire code centred around these themes:

Name more general than SOI sensors (e.g., use tag instead of pam)
Focus the workflow on pressure sensor (but still allows for acceleration or light data)
Update the notion of graph into State-Space Model notations (e.g. probability -> likelihood)
More memory efficient (store minimum graph info) while minimizing computational expense of the “slow” functions
Shorter workflow #69
Ease of labelling #67
Reproducibility and long-term storage with param.
Use of S3 class object with print and plot generic function.
Compatible with pipe |> or %>%
Use of cli for message and progress bar.
Be able to update tag and pressurepath without re-computing everything.

⚠️ See #55 for details on the functions named change ⚠️ See the migration wiki for a small guide to transition from v2.

Major

Use of GeoPressureR object: tag, graph, param, bird
Many new plot functions including update of geopressureviz()
Transition from raster to terra #59
New label scheme with test and messaging for troubleshooting #67 #73 #83
Create tag_update() and pressurepath_update()
Review the structure of a path and edges.

Minor

Formulate graph as a HMM #68
Simplified workflow #69
Use of cli for message.
Create graph_shortestpath https://github.com/Rafnuss/GeoPressureR/commit/b69c2a21b784f598b03822e940c02c216114e9f9
Review all tests and example
Review all functions names and parameters

GeoPressureR v2.7-beta

Major

Major fix in the computation of the marginal map https://github.com/Rafnuss/GeoPressureR/commit/bd1103fda0c5b4e3c0f218ee7bcf3fbc69dc6123

Minor

Improve graph_download_wind() #54
GeoPressureViz function in #52
Replace isoutliar with isoutlier in #43
Use assertthat in #46 and #47
Typo of equipment and retrieval in #48
Various minor fixes

Full Changelog

https://github.com/Rafnuss/GeoPressureR/compare/v2.6-beta…v2.7-beta

GeoPressureR v2.6-beta

Major

add windspeed download function graph_download_wind()

Minor

fixes for reading pam data
various fixes (see #42)

Full Changelog

https://github.com/Rafnuss/GeoPressureR/compare/v2.5-beta…v2.6-beta

GeoPressureR v2.5-beta

Major

Migration of all the vignette and data used for the vignette in GeoPressureManual https://github.com/Rafnuss/GeoPressureR/commit/bda0f7898dd9e6b8d9d786ce56ae3e5ec422c935
Read Migrate Technology data (should not be breaking change, but some significant changes) #23
Add logis function in flight_prob() https://github.com/Rafnuss/GeoPressureR/commit/6e1a8f0e93d82ec2a9bccce404cdb59fcc218277

Minor

Read Avonet data as package data https://github.com/Rafnuss/GeoPressureR/commit/c5c8d807f9a7e13a49e3d1565a7b3beffb58022f
Update of r-lib/actions to v2 https://github.com/Rafnuss/GeoPressureR/commit/3382fb9b7b9970f1c102cf9aabf3a6b06b5d505e
https://github.com/Rafnuss/GeoPressureR/commit/8720b6e6032f910f0c702e649a907dcf10bc2258
Improvement of GeoPressureViz https://github.com/Rafnuss/GeoPressureR/commit/97be49de4ed6c309b16e23fbedde1d618ae0a04c https://github.com/Rafnuss/GeoPressureR/commit/964b558913de7f7b6ef9915fc9cc41fc0b3dd0d3
Add checks and warning in functions
Preparation of the code for CRAN

Full Changelog

https://github.com/Rafnuss/GeoPressureR/compare/v2.4-beta…v2.5-beta

GeoPressureR v2.4-beta

Major

Accept request over water and display warning message. See #15
Add logging of error and return JSON file of the request in case of error for troubleshooting
Change downloading and reading of geotiff file to work on windows. See #16
Remove the artificial increase of flight duration at the creation of graph https://github.com/Rafnuss/GeoPressureR/commit/696566e8041e90d04e3e01d7d84ef299660bab6e
Compute groundspeed in parallel in graph creation https://github.com/Rafnuss/GeoPressureR/commit/b1466c737a66c740e2f6a35bcdbc19d9f5aebfd1

Minor

minor fixes for sta_id=0 or NA
minor fixes in geopressureviz()
add dummy graph test to improve coverage.
compute windspeed for short flight happening during the same hour
typos, code readability and stlyer

Full Changelog

https://github.com/Rafnuss/GeoPressureR/compare/v2.3-beta…v2.4-beta

GeoPressureR v2.3-beta

Major

Major fix of wind computation bearing to angle and m/s -> km/h
Major fix of twilight uncertainty using kernel density. The gamma fitting was very wrong https://github.com/Rafnuss/GeoPressureR/commit/5acfb136b8cac49d3cfd9633ce9a0a81ccc9b252
Major update in the data location to avoid being loaded when using the package. Move all data to inst/extdata to avoid having them loaded with https://github.com/Rafnuss/GeoPressureR/commit/65c8f8062cf07fb1471c9f15f6f08757d00951df
Add more information on various dataset to be able to load in GeoPressureViz
Change to the graph https://github.com/Rafnuss/GeoPressureR/commit/4aeed9ab77c8efe15b2da591247700d0ebb0cb5f

Minor

Multiple test file and add covr
Optimize sta_pam()
Re-write find_twilights
Create function graph_path2edge
Add energy figure
Multiple improvement on GeoPressureViz
Add citation and contribution file
use 100 character width
Add link to GeoPressureTemplate

Full Changelog

https://github.com/Rafnuss/GeoPressureR/compare/v2.2-beta…v2.3-beta

GeoPressureR v2.2-beta

Major

New function geopressure_map2path with return of index of lat-lon option
New function geopressure_ts_path to compute multiple geopressure_ts function on a full path
Update GeoPressureViz (https://rafnuss.shinyapps.io/GeoPressureViz/) to accept geopressure_ts_path output