Changelog

Source: NEWS.md

GeoPressureR v3.3

Major

• Read all sensors type and allow reading sensor without pressure assert_pressure = FALSE (https://github.com/Rafnuss/GeoPressureR/pull/123/commits/d11f8cc4774b4c91c27318c43d438823b681066e, https://github.com/Rafnuss/GeoPressureR/pull/123/commits/85ffe940ec46af8cd56592c2d641f25d19712129)
• Update to ecmwfr v2. Change to cds_token
• Improvement of tag_label_auto() with post-processing step
• Create path2twilight.R and Add twilight_line in plot_twilight

Minor:

• Fix issue with tag_plot_twilight() when twilight was not yet computed
• Update documentation of windsupport/drift
• Make twilight works with NA in light
• Add type to path as attribute
• Accept known as list and convert it if so
• Fix bug in compute_known in geolight_map()
• Improve progress_bar, remove extra \f, improve print
• Change default map height
• fix plot_twilight() for twl_offset
• update all actions

Full Changelog

https://github.com/Rafnuss/GeoPressureR/compare/v3.2.0…v3.3.0

GeoPressureR v3.2

Major

• Use the new GeoPressureAPI pressurepath entry point for geopressurepath_create()
• Update to GeoPressureAPI v2 for geopressure_timeseries() https://github.com/Rafnuss/GeoPressureR/pull/103/commits/732d1a02cc241dc7d2dde3401c8747fa860650c6
• Fix major bug https://github.com/Rafnuss/GeoPressureR/pull/103/commits/05c3203ef1588bbc1f769050377cadf5f1aadcbd
• Migrate from httrto httr2
• Fix major bug with saving environment variable in param https://github.com/Rafnuss/GeoPressureR/commit/9bcbf790a7de133448c738db272bf136dc831f8f
• Add functions speed2bearing() and windsupport() https://github.com/Rafnuss/GeoPressureR/commit/fe244f6057db14b6a286c0a77aaaef4c5ec0152c
• Use interpolated stap_id for flight instead of 0 https://github.com/Rafnuss/GeoPressureR/commit/d7491c2a5580c9eeafe598935933727489590a75
• Create edge_add_wind() https://github.com/Rafnuss/GeoPressureR/commit/36412dc8f0fd061798a701ca632766dbe6f069c8
• Create path2elevation() using GeoPressureAPI to compute ground elevation from a path

Minor

• Add workers argument in graph_create() https://github.com/Rafnuss/GeoPressureR/commit/e1ce45882809e1fd3da0e8feb2ff80ac70f2bf8b
• Add codemeta.json https://github.com/Rafnuss/GeoPressureR/pull/105/commits/4f7f7bce8875b4af59db3fc1ce403d41d6317469
• Add project status badge https://github.com/Rafnuss/GeoPressureR/pull/105/commits/ecd8f61ec49dcd376748e54d19dfb2000675d302
• Fix leaflet tile provider with Stadia change https://github.com/Rafnuss/GeoPressureR/pull/106/commits/8d9bd159874deb87d61907ea14911eca12877038
• Add WORDLIST for spelling package.
• Remove the use of ind in path https://github.com/Rafnuss/GeoPressureR/commit/f7b38e1c1b06666f590df394395d7db387f2565a
• Read temperature sensor https://github.com/Rafnuss/GeoPressureR/commit/17524658a5f49466a211ea5bfbfc34c523b09a47
• Only download wind data for non-existing file by default (instead of all flights) https://github.com/Rafnuss/GeoPressureR/commit/b6a2c41420bef2354a9ace640adffcb4e79e1aa1
• Remove pressurepath2altitude() now computed in pressurepath_create()

Full Changelog

https://github.com/Rafnuss/GeoPressureR/compare/v3.1.0…v3.2.0

GeoPressureR v3.1

Major

• Update to GeoPressureAPI v2, using thr_mask in geopressure_map_mismatch() and splitting keep_mse_mask.
• Adjust computation of ground speed to account for grid resolution.

Minor

• Use negative indexing for known
• remove trailing / to default directories.
• documentations and minor fixes.

Full Changelog

https://github.com/Rafnuss/GeoPressureR/compare/v3.0.0…v3.1.0

GeoPressureR v3.0

Guiding principles of v3

This new version consists of a significant revamp of the entire code centred around these themes:

• Name more general than SOI sensors (e.g., use tag instead of pam)
• Focus the workflow on pressure sensor (but still allows for acceleration or light data)
• Update the notion of graph into State-Space Model notations (e.g. probability -> likelihood)
• More memory efficient (store minimum graph info) while minimizing computational expense of the “slow” functions
• Shorter workflow #69
• Ease of labelling #67
• Reproducibility and long-term storage with param.
• Use of S3 class object with print and plot generic function.
• Compatible with pipe |> or %>%
• Use of cli for message and progress bar.
• Be able to update tag and pressurepath without re-computing everything.

⚠️ See #55 for details on the functions named change ⚠️ See the migration wiki for a small guide to transition from v2.

Major

• Use of GeoPressureR object: tag, graph, param, bird
• Many new plot functions including update of geopressureviz()
• Transition from raster to terra #59
• New label scheme with test and messaging for troubleshooting #67 #73 #83
• Create tag_update() and pressurepath_update()
• Review the structure of a path and edges.

Minor

• Formulate graph as a HMM #68
• Simplified workflow #69
• Use of cli for message.
• Create graph_shortestpath https://github.com/Rafnuss/GeoPressureR/commit/b69c2a21b784f598b03822e940c02c216114e9f9
• Review all tests and example
• Review all functions names and parameters

GeoPressureR v2.7-beta

Major

• Major fix in the computation of the marginal map https://github.com/Rafnuss/GeoPressureR/commit/bd1103fda0c5b4e3c0f218ee7bcf3fbc69dc6123

Minor

• Improve graph_download_wind() #54
• GeoPressureViz function in #52
• Replace isoutliar with isoutlier in #43
• Use assertthat in #46 and #47
• Typo of equipment and retrieval in #48
• Various minor fixes

Full Changelog

https://github.com/Rafnuss/GeoPressureR/compare/v2.6-beta…v2.7-beta

GeoPressureR v2.6-beta

Major

• add windspeed download function graph_download_wind()

Minor

• fixes for reading pam data
• various fixes (see #42)

Full Changelog

https://github.com/Rafnuss/GeoPressureR/compare/v2.5-beta…v2.6-beta

GeoPressureR v2.5-beta

Major

• Migration of all the vignette and data used for the vignette in GeoPressureManual https://github.com/Rafnuss/GeoPressureR/commit/bda0f7898dd9e6b8d9d786ce56ae3e5ec422c935
• Read Migrate Technology data (should not be breaking change, but some significant changes) #23
• Add logis function in flight_prob() https://github.com/Rafnuss/GeoPressureR/commit/6e1a8f0e93d82ec2a9bccce404cdb59fcc218277

Minor

• Read Avonet data as package data https://github.com/Rafnuss/GeoPressureR/commit/c5c8d807f9a7e13a49e3d1565a7b3beffb58022f
• Update of r-lib/actions to v2 https://github.com/Rafnuss/GeoPressureR/commit/3382fb9b7b9970f1c102cf9aabf3a6b06b5d505e
• https://github.com/Rafnuss/GeoPressureR/commit/8720b6e6032f910f0c702e649a907dcf10bc2258
• Improvement of GeoPressureViz https://github.com/Rafnuss/GeoPressureR/commit/97be49de4ed6c309b16e23fbedde1d618ae0a04c https://github.com/Rafnuss/GeoPressureR/commit/964b558913de7f7b6ef9915fc9cc41fc0b3dd0d3
• Add checks and warning in functions
• Preparation of the code for CRAN

Full Changelog

https://github.com/Rafnuss/GeoPressureR/compare/v2.4-beta…v2.5-beta

GeoPressureR v2.4-beta

Major

• Accept request over water and display warning message. See #15
• Add logging of error and return JSON file of the request in case of error for troubleshooting
• Change downloading and reading of geotiff file to work on windows. See #16
• Remove the artificial increase of flight duration at the creation of graph https://github.com/Rafnuss/GeoPressureR/commit/696566e8041e90d04e3e01d7d84ef299660bab6e
• Compute groundspeed in parallel in graph creation https://github.com/Rafnuss/GeoPressureR/commit/b1466c737a66c740e2f6a35bcdbc19d9f5aebfd1

Minor

• minor fixes for sta_id=0 or NA
• minor fixes in geopressureviz()
• add dummy graph test to improve coverage.
• compute windspeed for short flight happening during the same hour
• typos, code readability and stlyer

Full Changelog

https://github.com/Rafnuss/GeoPressureR/compare/v2.3-beta…v2.4-beta

GeoPressureR v2.3-beta

Major

• Major fix of wind computation bearing to angle and m/s -> km/h
• Major fix of twilight uncertainty using kernel density. The gamma fitting was very wrong https://github.com/Rafnuss/GeoPressureR/commit/5acfb136b8cac49d3cfd9633ce9a0a81ccc9b252
• Major update in the data location to avoid being loaded when using the package. Move all data to inst/extdata to avoid having them loaded with https://github.com/Rafnuss/GeoPressureR/commit/65c8f8062cf07fb1471c9f15f6f08757d00951df
• Add more information on various dataset to be able to load in GeoPressureViz
• Change to the graph https://github.com/Rafnuss/GeoPressureR/commit/4aeed9ab77c8efe15b2da591247700d0ebb0cb5f

Minor

• Multiple test file and add covr
• Optimize sta_pam()
• Re-write find_twilights
• Create function graph_path2edge
• Add energy figure
• Multiple improvement on GeoPressureViz
• Add citation and contribution file
• use 100 character width
• Add link to GeoPressureTemplate

Full Changelog

https://github.com/Rafnuss/GeoPressureR/compare/v2.2-beta…v2.3-beta

GeoPressureR v2.2-beta

Major

• New function geopressure_map2path with return of index of lat-lon option
• New function geopressure_ts_path to compute multiple geopressure_ts function on a full path
• Update GeoPressureViz (https://rafnuss.shinyapps.io/GeoPressureViz/) to accept geopressure_ts_path output

Minor

• fix flight and avonet database #10
• fix #9

Full Changelog

https://github.com/Rafnuss/GeoPressureR/compare/v2.1-beta…v2.2-beta

GeoPressureR v2.1-beta

Major

• Graph Addition of wind: https://raphaelnussbaumer.com/GeoPressureR/articles/wind-graph.html
• Movement model function: converting airspeed/groundspeed to probability.

Minor

• Minor correction of existing code
• cleaning of name, variable and file saved for more consistency
• Update to GeoPressureAPI v2.1

Full Changelog

https://github.com/Rafnuss/GeoPressureR/compare/v2.0-beta…v2.1-beta

GeoPressureR v2.0-beta

What’s Changed

• Add vignette and code for light geopositioning in #4
• minor language changes by @jsocolar in #7

New Contributors

• @jsocolar made their first contribution in #7

Full Changelog

https://github.com/Rafnuss/GeoPressureR/compare/v1.1-beta…v2.0-beta

GeoPressureR v1.1-beta

Full Changelog

https://github.com/Rafnuss/GeoPressureR/commits/v1.1-beta