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Add GLDP SOI Data to a Package

Source: R/add_gldp_soi.R
add_gldp_soi.Rd

This function adds data from the Swiss Ornithological Institute (SOI) to a package. It includes tags, measurements, and observations based on the provided data frame and directory of data. The function also handles missing directories and updates the package accordingly.

See an example of use with this tutorial.

Usage

add_gldp_soi(pkg, gdl, directory_data, generate_observations = TRUE)

Arguments

pkg

The package object to which the data will be added.

gdl

A data frame containing the SOI data. Must include columns like OrderName, GDL_ID, and other relevant fields for tags, measurements, and observations. See read_gdl for more information.

directory_data

A character string specifying the path to the directory where data files are located. This directory is used to locate and match GDL_IDs to their corresponding directories.

generate_observations

A logical value indicating whether to create pre-filled observations with missing values (date, locations, etc... assuming equipment and retrieval.

Value

The updated package object with the added resources.

Details

The function performs the following steps:

  • Checks and retrieves the directory information for each GDL_ID/tag_id.

  • Creates GeoPressureR tag data for each of them when possible

  • Extract measurements and add them as resources to pkg

  • Compute tags.csv and observations.csv from gdl and add them as resources too.